About this trial
The study aims to develop PRIME (PRostate cancer plasma Integrative Multi-modal Evaluation) liquid biopsy test and to implement its use to query prospectively collected samples in advanced prostate cancer (PCa) clinical trials and/or clinical settings. In order to maximise the utility of liquid biopsies for advanced PCa, PRIME is focused on the development of novel computational and sequencing approaches that integrate multiple information from plasma circulating elements: i) cell free DNA (cfDNA) gene mutation data with accurate quantitation of cfDNA structural genomic changes, ii) cfDNA genomic profiling with cfDNA methylation status, and iii) the information provided by extracellular vesicles (EVs) and EV-associated cargo (including DNA, RNA and proteins).
Eligibility criteria
This trial does not accept healthy volunteersQualifiers
Diagnosis of prostate cancer
Eligible for prostate cancer pharmacological treatment
Given consent to study participation
Disqualifiers
None
Trial population
Patients are selected at oncology care clinics at participating clinical sites.
Trial design
Cohort
Prospective
Treatments tested in this trial
Analysis of cell free DNA, and extracellular vesicles (EVs) and EV-associated molecular components (including RNA, DNA, proteins)
Diagnostic testPlasma and buffy coat samples are shipped from the recruiting clinical sites to the lab of Professor Francesca Demichelis at the University of Trento (UniTN). At UniTN, samples are stored in dedicated freezers with restricted access and subsequently used as follows: * the plasma is used for the isolation of cell free DNA and extracellular vesicles (EVs); * the buffy coat is used for the extraction of genomic DNA. Nucleic acids sequencing library preparations and all downstream omics analyses are performed by Prof. Demichelis team.
Treatment groups
Trial outcomes
Primary outcomes
Quantification of circulating tumor DNA (ctDNA) in the plasma
Number of circulating tumor DNA (ctDNA) in the plasma
Quantification of the fraction of cfDNA hypo/hypermethylation
Rate of cfDNA hypo/hypermethylation
Presence of recurrent somatic aberrations in ctDNA (such as loss of RB1, TP53, BRCA1/2, or AR amplification).
Assessment (yes/no) of recurrent somatic aberrations in ctDNA (such as loss of RB1, TP53,
Presence of Copy Number Variants (CNVs) in ctDNA
Assessment (yes/no) of Copy Number Variants (CNVs) in ctDNA
Sponsors and contacts
Click on the lead sponsor to view all of their trials.
Santa Chiara Hospital
Lead sponsor
Università degli Studi di Trento
Collaborator